Mering, Christian von: search on Z-Library

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1

Comparative assessment of large-scale data sets of protein–protein interactions

von Mering, Christian, Krause, Roland, Snel, Berend, Cornell, Michael, Oliver, Stephen G., Fields, Stanley, Bork, Peer

Journal:

Year:

2002

Language:

english

File:

PDF, 164 KB

english, 2002

2

Viruses.STRING: A Virus-Host Protein-Protein Interaction Database

Cook, Helen, Doncheva, Nadezhda, Szklarczyk, Damian, von Mering, Christian, Jensen, Lars

Journal:

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

3

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

Huerta-Cepas, Jaime, Szklarczyk, Damian, Heller, Davide, Hernández-Plaza, Ana, Forslund, Sofia K, Cook, Helen, Mende, Daniel R, Letunic, Ivica, Rattei, Thomas, Jensen, Lars J, von Mering, Christian, B

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 3.13 MB

english, 2018

4

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

Knief, Claudia, Delmotte, Nathanaël, Chaffron, Samuel, Stark, Manuel, Innerebner, Gerd, Wassmann, Reiner, von Mering, Christian, Vorholt, Julia A

Journal:

The ISME Journal

Year:

2012

Language:

english

File:

PDF, 679 KB

english, 2012

5

Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability

Leuenberger, Pascal, Ganscha, Stefan, Kahraman, Abdullah, Cappelletti, Valentina, Boersema, Paul J., von Mering, Christian, Claassen, Manfred, Picotti, Paola

Journal:

Year:

2017

Language:

english

File:

PDF, 2.53 MB

english, 2017

6

Limits to robustness and reproducibility in the demarcation of operational taxonomic units

Schmidt, Thomas S. B., Matias Rodrigues, João F., von Mering, Christian

Journal:

Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 3.24 MB

english, 2015

7

Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites

Tackmann, Janko, Arora, Natasha, Schmidt, Thomas Sebastian Benedikt, Rodrigues, João Frederico Matias, von Mering, Christian

Journal:

Year:

2018

Language:

english

File:

PDF, 1.62 MB

english, 2018

8

High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43

Rot, Gregor, Wang, Zhen, Huppertz, Ina, Modic, Miha, Lenče, Tina, Hallegger, Martina, Haberman, Nejc, Curk, Tomaž, von Mering, Christian, Ule, Jernej

Journal:

Year:

2017

Language:

english

File:

PDF, 2.83 MB

english, 2017

9

Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies

Heller, Davide, Szklarczyk, Damian, Mering, Christian von

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.12 MB

english, 2019

10

RAIN: RNA–protein Association and Interaction Networks

Junge, Alexander, Refsgaard, Jan C., Garde, Christian, Pan, Xiaoyong, Santos, Alberto, Alkan, Ferhat, Anthon, Christian, von Mering, Christian, Workman, Christopher T., Jensen, Lars Juhl, Gorodkin, Ja

Journal:

Year:

2017

Language:

english

File:

PDF, 761 KB

english, 2017

11

Inferring Correlation Networks from Genomic Survey Data

Friedman, Jonathan, Alm, Eric J., von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.56 MB

english, 2012

12

Pathway-specific protein domains are predictive for human diseases

Shim, Jung Eun, Kim, Ji Hyun, Shin, Junha, Lee, Ji Eun, Lee, Insuk, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.25 MB

english, 2019

13

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

Kurtz, Zachary D., Müller, Christian L., Miraldi, Emily R., Littman, Dan R., Blaser, Martin J., Bonneau, Richard A., von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.66 MB

english, 2015

14

Distinct and regulated activities of human Gli proteins in Drosophila

Christian von Mering, Konrad Basler

Journal:

Current Biology

Year:

1999

Language:

english

File:

PDF, 3.26 MB

english, 1999

15

Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale

Schmidt, Thomas S. B., Matias Rodrigues, João F., von Mering, Christian, Eisen, Jonathan A.

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.88 MB

english, 2014

16

Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens

Cai, Haoyang, Kumar, Nitin, Bagheri, Homayoun C, von Mering, Christian, Robinson, Mark D, Baudis, Michael

Journal:

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

17

MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis

Rodrigues, João F Matias, Schmidt, SB Thomas, Tackmann, Janko, von Mering, Christian

Journal:

Year:

2017

Language:

english

File:

PDF, 1.03 MB

english, 2017

18

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers

Şenbabaoğlu, Yasin, Sümer, Selçuk Onur, Sánchez-Vega, Francisco, Bemis, Debra, Ciriello, Giovanni, Schultz, Nikolaus, Sander, Chris, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 7.43 MB

english, 2016

19

Consistency of genome-based methods in measuring Metazoan evolution

Evgeny M. Zdobnov, Christian von Mering, Ivica Letunic, Peer Bork

Journal:

Year:

2005

Language:

english

File:

PDF, 300 KB

english, 2005

20

Protein Complexes are Central in the Yeast Genetic Landscape

Michaut, Magali, Baryshnikova, Anastasia, Costanzo, Michael, Myers, Chad L., Andrews, Brenda J., Boone, Charles, Bader, Gary D., von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 711 KB

english, 2011

21

Natural Selection on Functional Modules, a Genome-Wide Analysis

Serra, François, Arbiza, Leonardo, Dopazo, Joaquín, Dopazo, Hernán, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 958 KB

english, 2011

22

Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling

Lun, Xiao-Kang, Szklarczyk, Damian, Gábor, Attila, Dobberstein, Nadine, Zanotelli, Vito Riccardo Tomaso, Saez-Rodriguez, Julio, von Mering, Christian, Bodenmiller, Bernd

Journal:

Year:

2019

File:

PDF, 13.15 MB

2019

23

Shared components of protein complexes—versatile building blocks or biochemical artefacts?

Roland Krause, Christian von Mering, Peer Bork, Thomas Dandekar

Journal:

Year:

2004

Language:

english

File:

PDF, 293 KB

english, 2004

24

High Confidence Prediction of Essential Genes in Burkholderia Cenocepacia

Juhas, Mario, Stark, Manuel, von Mering, Christian, Lumjiaktase, Puthapoom, Crook, Derrick W., Valvano, Miguel A., Eberl, Leo, Battista, John R.

Journal:

Year:

2012

Language:

english

File:

PDF, 554 KB

english, 2012

25

The Hedgehog Signaling Pathway: Where Did It Come From?

Hausmann, George, von Mering, Christian, Basler, Konrad, Scott, Matthew P.

Journal:

Year:

2009

Language:

english

File:

PDF, 530 KB

english, 2009

26

SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles

Franceschini, Andrea, Lin, Jianyi, von Mering, Christian, Jensen, Lars Juhl

Journal:

Year:

2015

Language:

english

File:

PDF, 180 KB

english, 2015

27

Bioinformatics: From Molecules to Systems || Comparative Analysis of Environmental Sequences: Potential and Challenges

Konrad U. Foerstner, Christian von Mering and Peer Bork

Journal:

Philosophical Transactions Biological Sciences

Year:

2006

Language:

english

File:

PDF, 1.31 MB

english, 2006

28

Shotgun proteomics data from multiple organisms reveals remarkable quantitative conservation of the eukaryotic core proteome

Manuel Weiss, Sabine Schrimpf, Michael O. Hengartner, Martin J. Lercher, Christian von Mering

Journal:

Year:

2010

Language:

english

File:

PDF, 460 KB

english, 2010

29

Environments shape the nucleotide composition of genomes

Foerstner, Konrad U, von Mering, Christian, Hooper, Sean D, Bork, Peer

Journal:

Year:

2005

Language:

english

File:

PDF, 188 KB

english, 2005

30

Cell-Sorting at the A/P Boundary in the Drosophila Wing Primordium: A Computational Model to Consolidate Observed Non-Local Effects of Hh Signaling

Schilling, Sabine, Willecke, Maria, Aegerter-Wilmsen, Tinri, Cirpka, Olaf A., Basler, Konrad, von Mering, Christian, Shvartsman, Stanislav

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 301 KB

english, 2011

31

Quantitative Protein Localization Signatures Reveal an Association between Spatial and Functional Divergences of Proteins

Loo, Lit-Hsin, Laksameethanasan, Danai, Tung, Yi-Ling, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.70 MB

english, 2014

32

Sa1872 EBI2 Plays a Role in the Development of Intestinal Lymphoid Structures

Wyss, Annika, Raselli, Tina, Schmidt, Sebastian, Atrott, Kirstin, Frey-Wagner, Isabelle, von Mering, Christian, Sailer, Andreas W., Rogler, Gerhard, Misselwitz, Benjamin

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 132 KB

english, 2016

33

Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data

Tackmann, Janko, Matias Rodrigues, João Frederico, von Mering, Christian

Journal:

Year:

2019

Language:

english

File:

PDF, 2.41 MB

english, 2019

34

Massive pulmonary embolism in a COVID-19 patient: a case report

Sang, Charlie J, Heindl, Brittain, Von Mering, Gregory, Rajapreyar, Indranee, Deharo, Pierre, Kanakakis, John, Rampat, Rajiv, Camm, Christian Fielder, Thomson, Ross

Journal:

European Heart Journal - Case Reports

Year:

2020

File:

PDF, 603 KB

2020

35

The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction data

Hermjakob, Henning, Montecchi-Palazzi, Luisa, Bader, Gary, Wojcik, Jérôme, Salwinski, Lukasz, Ceol, Arnaud, Moore, Susan, Orchard, Sandra, Sarkans, Ugis, von Mering, Christian

Journal:

Nature Biotechnology

Year:

2004

Language:

english

File:

PDF, 1.49 MB

english, 2004

36

Prion Protein Devoid of the Octapeptide Repeat Region Restores Susceptibility to Scrapie in PrP Knockout Mice

Eckhard Flechsig, Doron Shmerling, Ivan Hegyi, Alex J Raeber, Marek Fischer, Antonio Cozzio, Christian von Mering, Adriano Aguzzi, Charles Weissmann

Journal:

Year:

2000

Language:

english

File:

PDF, 617 KB

english, 2000

37

A sentinel protein assay for simultaneously quantifying cellular processes

Soste, Martin, Hrabakova, Rita, Wanka, Stefanie, Melnik, Andre, Boersema, Paul, Maiolica, Alessio, Wernas, Timon, Tognetti, Marco, von Mering, Christian, Picotti, Paola

Journal:

Year:

2014

Language:

english

File:

PDF, 548 KB

english, 2014

38

Genome organization: Teamed up for transcription

von Mering, Christian, Bork, Peer

Journal:

Year:

2002

Language:

english

File:

PDF, 149 KB

english, 2002

39

Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network

Kahraman, Abdullah, Karakulak, TÃ¼lay, Szklarczyk, Damian, von Mering, Christian

Journal:

Scientific Reports

Year:

2020

File:

PDF, 5.58 MB

2020

40

Microbial rhodopsins on leaf surfaces of terrestrial plants

Nof Atamna-Ismaeel, Omri M. Finkel, Fabian Glaser, Itai Sharon, Ron Schneider, Anton F. Post, John L. Spudich, Christian von Mering, Julia A. Vorholt, David Iluz, Oded Béjà, Shimshon Belkin

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 538 KB

english, 2012

41

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

Kembel, Steven W., Wu, Martin, Eisen, Jonathan A., Green, Jessica L., von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

42

Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes

Takeuchi, Yayoi, Chaffron, Samuel, Salcher, Michaela M., Shimizu-Inatsugi, Rie, Kobayashi, Masaki J., Diway, Bibian, von Mering, Christian, Pernthaler, Jakob, Shimizu, Kentaro K.

Journal:

Systematic and Applied Microbiology

Year:

2015

Language:

english

File:

PDF, 2.18 MB

english, 2015

43

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

Huerta-Cepas, Jaime, Forslund, Kristoffer, Pedro Coelho, Luis, Szklarczyk, Damian, Juhl Jensen, Lars, von Mering, Christian, Bork, Peer

Journal:

Molecular Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 996 KB

english, 2017

44

Termites in the woodwork

Samuel Chaffron, Christian von Mering

Journal:

Year:

2007

Language:

english

File:

PDF, 718 KB

english, 2007

45

Evidence for Finely-Regulated Asynchronous Growth of Toxoplasma gondii Cysts Based on Data-Driven Model Selection

Sullivan, Adam M., Zhao, Xiaopeng, Suzuki, Yasuhiro, Ochiai, Eri, Crutcher, Stephen, Gilchrist, Michael A., von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 578 KB

english, 2013

46

Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes

Fokkens, Like, Snel, Berend, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 597 KB

english, 2009

47

Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details

Feigelman, Rounak, Kahlert, Christian R., Baty, Florent, Rassouli, Frank, Kleiner, Rebekka L., Kohler, Philipp, Brutsche, Martin H., von Mering, Christian

Journal:

Year:

2017

Language:

english

File:

PDF, 1.91 MB

english, 2017

48

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

Stein, Richard R., Bucci, Vanni, Toussaint, Nora C., Buffie, Charlie G., Rätsch, Gunnar, Pamer, Eric G., Sander, Chris, Xavier, João B., von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.13 MB

english, 2013

49

The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland

Sabine P. Schrimpf, Christian von Mering, Emøke Bendixen, Joshua L. Heazlewood, Dirk Bumann, Gil Omenn, Michael O. Hengartner

Journal:

Year:

2012

Language:

english

File:

PDF, 162 KB

english, 2012

50

Arabidopsis Female Gametophyte Gene Expression Map Reveals Similarities between Plant and Animal Gametes

Samuel E. Wuest, Kitty Vijverberg, Anja Schmidt, Manuel Weiss, Jacqueline Gheyselinck, Miriam Lohr, Frank Wellmer, Jörg Rahnenführer, Christian von Mering, Ueli Grossniklaus

Journal:

Current Biology

Year:

2010

Language:

english

File:

PDF, 1.47 MB

english, 2010

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